Changes

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|-

| <code>--states 200</code>

| <code>--states 200</code>

| Number of haplotypes to consider during each update. Increasing this value will typically lead to better haplotypes, but can dramatically increase computing time and memory use. A value of 100 - 400 is typical.  

| Number of haplotypes to consider during each update. Increasing this value will typically lead to better haplotypes, but can dramatically increase computing time and memory use. A value of 200 - 400 is typical.  

|-

|-

| <code>--rounds 20</code>

| <code>--rounds 20</code>

| Iterations of the Markov sampler to use for haplotyping. Typically, using 20 - 100 rounds should give good results. To obtain better results, it is usually better to increase the <code>--states</code> parameter.

| Iterations of the Markov sampler to use for haplotyping. Typically, using 20 - 30 rounds should give good results. To obtain better results, it is usually better to increase the <code>--states</code> parameter.

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|-

| <code>--interim 5</code>

| <code>--interim 5</code>