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27 bytes added
, 23:19, 6 March 2011
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| |- | | |- |
| | start | | | start |
− | | Start position to plot. | + | | Start position to display on plot. |
| |- | | |- |
− | | stop | + | | end |
− | | Stop position. | + | | End position to display on plot. |
| |- | | |- |
| | flank | | | flank |
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| The second row would plot 1.25 MB on either side of TCF7L2's transcription start and stop. The SNP with the most significant p-value in your <code>--metal</code> file will be used as the reference SNP. The plot title would read "TCF7L2 Region", and the recombination overlay would be disabled using showRecomb=F. | | The second row would plot 1.25 MB on either side of TCF7L2's transcription start and stop. The SNP with the most significant p-value in your <code>--metal</code> file will be used as the reference SNP. The plot title would read "TCF7L2 Region", and the recombination overlay would be disabled using showRecomb=F. |
| | | |
− | The third row would plot rs7957197 as the reference SNP, but here we've specifically designated the region to plot, which is chr12:119503590-120322280. We've also disabled showing SNP annotations with showAnnot=F. | + | The third row would plot rs7957197 as the reference SNP, but here we've specifically designated the region to plot, which is chr12:119503590-120322280. We've also disabled showing SNP annotations with showAnnot=F. |
| | | |
| === User-supplied LD === | | === User-supplied LD === |