3,045
edits
Changes
From Genome Analysis Wiki
Jump to navigationJump to searchno edit summary
==== Update the File ====
==== Update the File ====
[[SuperDeDuper]] - Determine duplicate alignments, either marking or removing the lower quality duplicates. In addition, it may modify paired-end reads where the ends overlap by soft clipping the end with the lower quality bases in the region of overlap.
*[[RGMergeBam]] – Merge sorted BAM files adding Read Groups
*[[RGMergeBam]] – Merge sorted BAM files adding Read Groups
*[[PolishBam]] – Add/Update header lines & add RG tag to each record
*[[PolishBam]] – Add/Update header lines & add RG tag to each record
