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Minimac
,→Creating SNP List File
=== Creating SNP List File ===
'''Minimac''' requires a file listing markers in the haplotype file. This file can be easily generated by extracting the first second column from the .info dat file created during the MaCH haplotyping process. In a standard Unix system, a command like this should do:
cut -f 1 target.info > target.snps