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The following will give the most information (without validating that the file is sorted):
The following will give the most information (without validating that the file is sorted):
./bam validate --in <inputFile> --verbose
./bam validate --in <inputFile> --verbose
=== Output ===
The error details (--verbose) and the statistics are printed to stderr. If you want that to go to a file you need to redirect stderr.
For a bash shell, redirect to stderr by doing:
./bam validate --in <inputFile> --verbose 2> outputFile.txt
