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We supply genotype files for computing LD between the reference SNP and all other SNPs within the region you are plotting. The tables below show the supported combinations of LD source, population, and build. Note that you can always provide your own LD files, see [[#User-supplied_LD|User-supplied LD]] for more information.
We supply genotype files for computing LD between the reference SNP and all other SNPs within the region you are plotting. The tables below show the supported combinations of LD source, population, and build. Note that you can always provide your own LD files, see [[#User-supplied_LD|User-supplied LD]] for more information.
'''1000G'''
'''1000G'''
{| width="75%" cellspacing="0" cellpadding="5" border="1"
{| width="75%" cellspacing="0" cellpadding="5" border="1"
|-
|-
! scope="col" align="left" | Release
! align="left" scope="col" | Release
! scope="col" align="left" | Build
! align="left" scope="col" | Build
! scope="col" align="left" | Population
! align="left" scope="col" | Population
! scope="col" align="left" | LocusZoom Arguments
! align="left" scope="col" | LocusZoom Arguments
|-
|-
| June 2010 || hg18 || CEU || --pop CEU --build hg18 --source 1000G_June2010
| Nov 2010
| hg19
| ASN
| --pop ASN --build hg19 --source 1000G_Nov2010
|-
|-
| June 2010 || hg18 || YRI || --pop YRI --build hg18 --source 1000G_June2010
| Nov 2010
| hg19
| AFR
| --pop AFR --build hg19 --source 1000G_Nov2010
|-
|-
| June 2010 || hg18 || JPT+CHB || --pop JPT+CHB --build hg18 --source 1000G_June2010
| Nov 2010
| hg19
| EUR
| --pop EUR --build hg19 --source 1000G_Nov2010
|-
|-
| August 2009 || hg18 || CEU || --pop CEU --build hg18 --source 1000G_Aug2009
| June 2010
| hg18
| CEU
| --pop CEU --build hg18 --source 1000G_June2010
|-
|-
| August 2009 || hg18 || YRI || --pop YRI --build hg18 --source 1000G_Aug2009
| June 2010
| hg18
| YRI
| --pop YRI --build hg18 --source 1000G_June2010
|-
|-
| August 2009 || hg18 || JPT+CHB || --pop JPT+CHB --build hg18 --source 1000G_Aug2009
| June 2010
| hg18
| JPT+CHB
| --pop JPT+CHB --build hg18 --source 1000G_June2010
|-
| August 2009
| hg18
| CEU
| --pop CEU --build hg18 --source 1000G_Aug2009
|-
| August 2009
| hg18
| YRI
| --pop YRI --build hg18 --source 1000G_Aug2009
|-
| August 2009
| hg18
| JPT+CHB
| --pop JPT+CHB --build hg18 --source 1000G_Aug2009
|}
|}
<br> '''HapMap Phase II'''
'''HapMap Phase II'''
{| width="75%" cellspacing="0" cellpadding="5" border="1"
{| width="75%" cellspacing="0" cellpadding="5" border="1"
|-
|-
! scope="col" align="left" | Build
! align="left" scope="col" | Build
! scope="col" align="left" | Population
! align="left" scope="col" | Population
! scope="col" align="left" | LocusZoom Arguments
! align="left" scope="col" | LocusZoom Arguments
|-
|-
| hg18 || CEU || --pop CEU --build hg18 --source hapmap
| hg18
| CEU
| --pop CEU --build hg18 --source hapmap
|-
|-
| hg18 || YRI|| --pop YRI--build hg18 --source hapmap
| hg18
| YRI
| --pop YRI--build hg18 --source hapmap
|-
|-
| hg18 || JPT+CHB || --pop JPT+CHB --build hg18 --source hapmap
| hg18
| JPT+CHB
| --pop JPT+CHB --build hg18 --source hapmap
|}
|}
