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! scope="col" | Description
! scope="col" | Description
|-
|-
| LATEST_BUILD
| DEFAULT_BUILD
| Latest build (i.e. the default build.) This is used to index SQLITE_DB, as well as LD_DB.
| Default build to use for finding SNP positions, and calculating LD. This is used to index SQLITE_DB, as well as LD_DB.
|-
| DEFAULT_POP
| Default population to use for computing LD.
|-
| DEFAULT_SOURCE
| Default source for computing LD.
|-
|-
| NEWFUGUE_PATH
| NEWFUGUE_PATH
| Path to the new_fugue binary. Defaults to "new_fugue", which simply means it is searched for on your path. If new_fugue is not on your path, you will need to specify the full path here.
| Path to the new_fugue binary. Defaults to "new_fugue", which simply means it is searched for on your path. If new_fugue is not on your path, you will need to specify the full path here.
|-
|-
| OFFLINE
| PLINK_PATH
| For the standalone version of LocusZoom, this should always be True.
| Path to the PLINK binary. Defaults to "plink", which searches for PLINK on your path. If it is not on your path, specify the full path here.
|-
|-
| SQLITE_DB
| SQLITE_DB
| LD_DB
| LD_DB
| Contains a "tree" which maps a tuple of (genotype source, genotype population, genome build) to genotype files.
| Contains a "tree" which maps a tuple of (genotype source, genotype population, genome build) to genotype files.
|}
|}
