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, 20:22, 29 July 2011
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| == Do I always have to sort the pedigree file by marker position? == | | == Do I always have to sort the pedigree file by marker position? == |
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− | If you use a reference set of haplotypes, you do not have to as long as the external reference is in correct order. **HOWEVER**, you will probably avoid problems by including markers in the pedigree file sorted in chromosome order. | + | If you use a reference set of haplotypes, you do not have to as long as the external reference is in correct order. |
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| == What if I specify ''--states R'' where ''R'' exceeds the maximum possible (2*number diploid individuals - 2 + number_haplotypes)? == | | == What if I specify ''--states R'' where ''R'' exceeds the maximum possible (2*number diploid individuals - 2 + number_haplotypes)? == |