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Jump to navigationJump to searchIMPUTE2: 1000 Genomes Imputation Cookbook (view source)
Revision as of 06:37, 5 August 2011
, 06:37, 5 August 2011→Pre-Phasing using IMPUTE2
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where <code>sge</code> should be replaced with the appropriate command for submitting jobs to your cluster (<code>sge</code> applies to sun grid engine, other common choices might be <code>qsub</code> and <code>mosrun</code>. The three numbers correspond to chromosome and chunk start and end positions.
where <code>sge</code> should be replaced with the appropriate command for submitting jobs to your cluster (<code>sge</code> applies to sun grid engine, other common choices might be <code>qsub</code> and <code>mosrun</code>). The three numbers correspond to chromosome and chunk start and end positions.
On a 30 node cluster, phasing should take approximately 5 hours per 1000 individuals.
On a 30 node cluster, phasing should take approximately 5 hours per 1000 individuals.
