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LibStatGen: FASTQ

1,167 bytes added, 15:28, 5 February 2010
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== FastQ Validator Output ==
'''Description Coming Soon'''When running the fastQValidator Executable, the output starts with a summary of the parameters: The following parameters are in effect: FastQ File Name : testFile.txt (-fname) Min Read Length : 10 (-l9999) Max Reported Errors : 100 (-e9999) BaseType : BC (-bname) TestMode : (-tname) Both the Executable and the Library outputs the following:*Error messages for the first Configurable number of errors.: ERROR on Line 25: The sequence identifier line was too short. ERROR on Line 29: First line of a sequence does not begin wtih @ ERROR on Line 33: No Sequence Identifier specified before the comment.*Base Composition Percentages by Index:  Base Composition Statistics: Read Index %A %C %G %T %N Total Reads At Index 0 100.00 0.00 0.00 0.00 0.00 20 1 5.00 95.00 0.00 0.00 0.00 20 2 5.00 0.00 5.00 90.00 0.00 20*Summary of the number of lines, sequences, and errors: Finished processing testFile.txt with 92 lines containing 20 sequences. There were a total of 17 errors.

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