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Welcome to our brand new wiki!

For basic instructions, see [[~~basic instructions~~http://en.wikipedia.org/wiki/Wikipedia:Tutorial the Wikipedia Tutorial]].

~~We suggest using your uniqname as your login ID here. Please DO NOT use your umich kerberos password here.~~== Sequence Analysis Tools ==

~~== What Is Available ==~~We are developing several tools for the analysis of next generation sequence data.

~~You have come to the right place for documentation of:~~=== Read Mapping ===

[[Karma|Karma]] - Our fast short read aligner

[[Karma-colorspace|Karma-ColorSpace]] - QUICKSTART on mapping color space reads

=== Variant Calling ===

[[glfSingle]] - Variant calling for a single, deeply sequenced individual

[[glfTrio]] - Variant calling for a single, deeply sequence nuclear family with two parents and one child

[[glfMultiples]] -- Variant calling for multiple, unrelated individuals

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