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58 bytes added, 11:55, 2 September 2011
Programs: Add comments to convert for switching between '=' and bases in the sequence.
The bam executable has the following functions.
* [[C++ Executable: bam#validate|validate - Read and Validate a SAM/BAM file]]
* [[BamUtil: convert|convert - Read a SAM/BAM file and write as a SAM/BAM file(optionally converts between '=' & bases in the sequence)]]
* [[C++ Executable: bam#dumpHeader|dumpHeader - Print SAM/BAM header]]
* [[C++ Executable: bam#splitChromosome|splitChromosome - Split BAM by Chromosome]]

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