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LibStatGen: BAM (view source)

Revision as of 08:30, 7 September 2011

220 bytes removed ,  08:30, 7 September 2011
Update Executable description
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| <code>[http://www.sph.umich.edu/csg/mktrost/doxygen/current/classSamHeaderRecord.html SamHeaderRecord]</code>
 
| <code>[http://www.sph.umich.edu/csg/mktrost/doxygen/current/classSamHeaderRecord.html SamHeaderRecord]</code>
 
| Class used for storing the tag/value pairs within a given header line.
 
| Class used for storing the tag/value pairs within a given header line.
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'''The documentation for the following classes still needs to be updated.'''
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{| style="margin: 1em 1em 1em 0; background-color: #f9f9f9; border: 1px #aaa solid; border-collapse: collapse;" border="1"
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|-style="background: #f2f2f2; text-align: center;"
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! Class Name !!  Description
   
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| <code>[[C++ Class: SamRecord|SamRecord]]</code>
 
| <code>[[C++ Class: SamRecord|SamRecord]]</code>
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== Executable ==
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== Programs ==
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An executable that converts between SAM and BAM formats and that can validate SAM/BAM Records has been developed: [[C++ Executable: bam|bam]] and specifically [[BamValidator]]
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BamUtil contains a set of programs that uses this library to operate on SAM & BAM files.  It includes tools for converting between SAM & BAM and validating the files.  See [[BamUtil]] for more information and a description of all the tools.
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== Suggested Improvements/Features ==
 
== Suggested Improvements/Features ==
 
See [[C++ Library: BAM Change Log#Known Issues|Change Log]]
 
See [[C++ Library: BAM Change Log#Known Issues|Change Log]]
Retrieved from "http://genome.sph.umich.edu/wiki/Special:MobileDiff/3694"

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