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Don't forget to put in the paths to the executable and your test files.
Don't forget to put in the paths to the executable and your test files.
= Usage =
./bam convert --in <inputFile> --out <outputFile.sam/bam/ubam (ubam is uncompressed bam)> [--refFile <reference filename>] [--seqBases|--seqEquals|--seqOrig] [--recover] [--noeof] [--params]
= Parameters =
= Parameters =
In real cases, we have recovered better than 94% of reads from a set of severely damaged files (numerous 64K chunks of a RAID were lost), and better than 99.9% recovery from a moderately damaged file (3 disk pages were corrupt).
In real cases, we have recovered better than 94% of reads from a set of severely damaged files (numerous 64K chunks of a RAID were lost), and better than 99.9% recovery from a moderately damaged file (3 disk pages were corrupt).
= Return Value =
= Return Value =
