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100 bytes added
, 14:52, 7 October 2011
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| There are two output options for BaseQC. | | There are two output options for BaseQC. |
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− | #Percentages | + | #[[#Percentage-Based Output Format|Percentage-Based Output Format]] |
− | #Straight Counts | + | #[[#Count-Based Output Format|Count-Based Output Format]] |
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| ==== Percentage-Based Output Format ==== | | ==== Percentage-Based Output Format ==== |
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| |} | | |} |
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− | This output does not include a MapQual255 count in version 1.0. | + | This output does not include a MapQual255 count. |
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| ===== Sample Output ===== | | ===== Sample Output ===== |
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| </pre> | | </pre> |
| ==== Count-Based Output Format ==== | | ==== Count-Based Output Format ==== |
− | | + | Order/Descriptions: |
| {|border=1 | | {|border=1 |
| ! Field !! Description !!style="width: 80px"| Excludes Duplicates, QC Failures !!style="width: 80px"| Excludes Unmapped !!style="width: 80px"| Excludes MapQual = 255 !!style="width: 80px"| Excludes Below Min MapQual | | ! Field !! Description !!style="width: 80px"| Excludes Duplicates, QC Failures !!style="width: 80px"| Excludes Unmapped !!style="width: 80px"| Excludes MapQual = 255 !!style="width: 80px"| Excludes Below Min MapQual |