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91 bytes added
, 12:47, 15 November 2011
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| *[[BamUtil: revert|Revert]] - Revert SAM/BAM replacing the specified fields with their previous values (if known) and removes specified tags | | *[[BamUtil: revert|Revert]] - Revert SAM/BAM replacing the specified fields with their previous values (if known) and removes specified tags |
| *[[BamUtil: squeeze|Squeeze]] - Reduce files size by dropping OQ fields, duplicates, specified tags, using '=' when a base matches the reference, binning quality scores, and replacing readNames with unique integers | | *[[BamUtil: squeeze|Squeeze]] - Reduce files size by dropping OQ fields, duplicates, specified tags, using '=' when a base matches the reference, binning quality scores, and replacing readNames with unique integers |
| + | *[[BamUtil: clipOverlap|ClipOverlap]] - Clip overlapping read pairs so they do not overlap |
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| ==== Helper Tools to Print Readable Information ==== | | ==== Helper Tools to Print Readable Information ==== |