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242 bytes added
, 15:56, 28 November 2011
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| | 0-based region end position (not included in the output file). | | | 0-based region end position (not included in the output file). |
| |} | | |} |
− |
| |
| | | |
| === output File (<code>--outStats</code>) === | | === output File (<code>--outStats</code>) === |
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| == Return Value == | | == Return Value == |
− | The software returns 0 on completion, or -1 if the parameters could not be read or there was a problem reading an input file. | + | The software returns 0 on successful completion, or non-zero on a failure. |
| | | |
| == Output == | | == Output == |
− | A status message is written to cerr on failures, and upon completion, "Done writing to " followed by the output file name is written to cerr.
| + | Status/error messages are written to cerr. |
| + | |
| + | If an invalid region is found in the regionList, "NonOverlapRegionPos::add: Invalid Range, start must be < end, but ", followed by the start position, followed by " >= ", followed by the end position. |
| + | |
| + | Upon completion, "Done subsetBaseQCStats." is written to cerr. |
| + | |
| + | '''Example Output:''' |
| + | NonOverlapRegionPos::add: Invalid Range, start must be < end, but 112 >= 111 |
| + | Done subsetBaseQCStats. |
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| | | |
| [[Category:BAM_Software]] [[Category:Software]] | | [[Category:BAM_Software]] [[Category:Software]] |