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242 bytes added ,  15:56, 28 November 2011
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| 0-based region end position (not included in the output file).
 
| 0-based region end position (not included in the output file).
 
|}
 
|}
      
=== output File (<code>--outStats</code>) ===
 
=== output File (<code>--outStats</code>) ===
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== Return Value ==
 
== Return Value ==
The software returns 0 on completion, or -1 if the parameters could not be read or there was a problem reading an input file.
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The software returns 0 on successful completion, or non-zero on a failure.
    
== Output ==
 
== Output ==
A status message is written to cerr on failures, and upon completion, "Done writing to " followed by the output file name is written to cerr.
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Status/error messages are written to cerr.
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If an invalid region is found in the regionList, "NonOverlapRegionPos::add: Invalid Range, start must be < end, but ", followed by the start position, followed by " >= ", followed by the end position.
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Upon completion, "Done subsetBaseQCStats." is written to cerr.
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'''Example Output:'''
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NonOverlapRegionPos::add: Invalid Range, start must be < end, but 112 >= 111
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Done subsetBaseQCStats.
       
[[Category:BAM_Software]] [[Category:Software]]
 
[[Category:BAM_Software]] [[Category:Software]]

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