12
edits
Changes
From Genome Analysis Wiki
Jump to navigationJump to search→Build UMAKE
Note that UMAKE requires external software packages to be copied to <code>$(UMAKE_HOME)/ext/</code> directory
Note that UMAKE requires external software packages to be copied to <code>$(UMAKE_HOME)/ext/</code> directory
* create a "ext" folder under UMAKE_HOME
* <code>bgzip</code> and <code>tabix</code> - To download, go to [http://sourceforge.net/projects/samtools/files/tabix/ TABIX Download]
* <code>bgzip</code> and <code>tabix</code> - To download, go to [http://sourceforge.net/projects/samtools/files/tabix/ TABIX Download]
(after compiling the source code, copy bgzip and tabix to the "ext" folder above)
* <code>beagle</code> - To download, go to [http://faculty.washington.edu/browning/beagle/beagle.html#download BEAGLE Download]
* <code>beagle</code> - To download, go to [http://faculty.washington.edu/browning/beagle/beagle.html#download BEAGLE Download]
* Copy bgzip and tabix to /usr/cluster/bin/ or replace "/usr/cluster/bin" with the complete path of the above "ext" folder at line 652 and 654 of umake.pl under $(UMAKE_HOME)/scripts/
== Basic Usage Example ==
== Basic Usage Example ==
