Changes

UMAKE (view source)

178 bytes removed , 22:22, 19 December 2011

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* Finally, run BEAGLE/THUNDER genotype refinement using the

perl $(UMAKE_HOME)/scripts/umake.pl --thunder

−

* If SNP site is already defined, instead of --snpcall option, you can extract the genotype likelihood using the following command

−

~~perl $(UMAKE_HOME)/scripts/umake.pl --extract~~

* If using MOSIX nodes, change default MOSIX_PREFIX as following:

MOS_PREFIX = mosrun -E/tmp -t -i -m 2000 # PREFIX FOR MOSIX COMMAND (BLANK IF UNUSED)

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