Changes

* Create an "ext" folder under UMAKE_HOME (the path to the UMAKE package)

* Create an "ext" folder under UMAKE_HOME (the path to the UMAKE package)

* <code>bgzip</code> and <code>tabix</code> - To download, go to [http://sourceforge.net/projects/samtools/files/tabix/ TABIX Download]

* <code>bgzip</code> and <code>tabix</code> - To download, go to [http://sourceforge.net/projects/samtools/files/tabix/ TABIX Download] (after compiling the source code, copy bgzip and tabix to the "ext" folder above)

(after compiling the source code, copy bgzip and tabix to the "ext" folder above)

* <code>beagle</code> - To download, go to [http://faculty.washington.edu/browning/beagle/beagle.html#download BEAGLE Download] (Rename "beagle.jar" to "beagle.20101226.jar" and copy it to the "ext" folder)

* <code>beagle</code> - To download, go to [http://faculty.washington.edu/browning/beagle/beagle.html#download BEAGLE Download] (Rename "beagle.jar" to "beagle.20101226.jar" and copy it to the "ext" folder)