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10 bytes added, 16:47, 16 January 2012
** [[BamUtil: findCigars|'''findCigars''' - Output just the reads that contain any of the specified CIGAR operations]]
** [[BamUtil: readIndexedBam|'''readIndexedBam''' - Read an indexed BAM file reference by reference id -1 to the max reference id and write it out as a SAM/BAM file]]
** [[SplitBamBamUtil: splitBam|'''splitBam''' - Split SAM/BAM file by Read Group.]]
* Modify & write SAM/BAM Files

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