Changes

** [[BamUtil: findCigars|'''findCigars''' - Output just the reads that contain any of the specified CIGAR operations]]

** [[BamUtil: findCigars|'''findCigars''' - Output just the reads that contain any of the specified CIGAR operations]]

** [[BamUtil: readIndexedBam|'''readIndexedBam''' - Read an indexed BAM file reference by reference id -1 to the max reference id and write it out as a SAM/BAM file]]

** [[BamUtil: readIndexedBam|'''readIndexedBam''' - Read an indexed BAM file reference by reference id -1 to the max reference id and write it out as a SAM/BAM file]]

** [[SplitBam|'''splitBam''' - Split SAM/BAM file by Read Group.

** [[BamUtil: splitBam|'''splitBam''' - Split SAM/BAM file by Read Group]]

* Modify & write SAM/BAM Files

* Modify & write SAM/BAM Files