3,045
edits
Changes
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This output does not include a MapQual255 count.
This output does not include a MapQual255 count.
===== Sample Output =====
===== Sample Output =====
1 10024 10025 14 12 85.714 39 30 76.923 51.282 25.641 51.282 84.615 38.462 15.385 15.385 11.000 21
1 10024 10025 14 12 85.714 39 30 76.923 51.282 25.641 51.282 84.615 38.462 15.385 15.385 11.000 21
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==== Count-Based Output Format (<code>--pBaseQC</code>) ====
==== Count-Based Output Format (<code>--pBaseQC</code>) ====
Order/Descriptions:
Order/Descriptions:
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==== Summary of per Position Statistics (<code>--baseSum</code>) ====
==== Summary of per Position Statistics (<code>--baseSum</code>) ====
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|}
===== Sample Output =====
===== Sample Output =====
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TotalReads Dups QCFail Mapped Paired ProperPaired ZeroMapQual MapQual<10 MapQual255 PassMapQual AverageMapQuality AverageMapQualCount
TotalReads Dups QCFail Mapped Paired ProperPaired ZeroMapQual MapQual<10 MapQual255 PassMapQual AverageMapQuality AverageMapQualCount
Depth Q20Bases
Depth Q20Bases
14.307692 1.846154 1.846154 8.769231 7.846154 0.923077 2.923077 5.846154 0.000000 2.923077 11.000000
14.307692 1.846154 1.846154 8.769231 7.846154 0.923077 2.923077 5.846154 0.000000 2.923077 11.000000 8.769231 2.076923 1.153846
8.769231 2.076923 1.153846
17.670053 2.882307 2.882307 9.038380 7.603137 1.441153 3.012793 6.025586 0.000000 3.012793 0.000000 9.038380 2.841993 1.993579
17.670053 2.882307 2.882307 9.038380 7.603137 1.441153 3.012793 6.025586 0.000000 3.012793 0.000000
9.038380 2.841993 1.993579
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[[Category:BamUtil|stats]] [[Category:BAM_Software]] [[Category:Software]]
[[Category:BamUtil|stats]] [[Category:BAM_Software]] [[Category:Software]]
