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Thunder

2 bytes removed, 07:31, 2 February 2012
(step 2) Genotype/haplotype calling using thunder thunder_glf_freq
=== (step 2) Genotype/haplotype calling using thunder [https://www.sph.umich.edu/csg/yli/thunder/thunder.V010.source.tgz thunder_glf_freq] ===
thunder_glf_freq --shotgun my.out.$chr ----detailedInput -r 100 --states 200 --dosage --phase --interim 25 -o my.final.out
Notes:
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