Changes

Explanation of Options

Explanation of Options

             --shotgun:   Standard [http://www.1000genomes.org/node/101  VCF file (4.0 and above)] .         

             --shotgun:   Standard VCF file (4.0 and above).         

             --pedfile:    Pedigree file in [http://www.sph.umich.edu/csg/abecasis/Merlin/tour/input_files.html  MERLIN format].

             --pedfile:    Pedigree file in [ http://www.sph.umich.edu/csg/abecasis/Merlin/tour/input_files.html  MERLIN format].

                 --seed:    Seed for sampling, default 123456.

                 --seed:    Seed for sampling, default 123456.

               --burnin:    The number of rounds ignored at the beginning of sampling.

               --burnin:    The number of rounds ignored at the beginning of sampling.