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TrioCaller (view source)

Revision as of 11:57, 10 February 2012

No change in size ,  11:57, 10 February 2012
→‎Initial set of variant calls
Line 122: Line 122:  
   samtools mpileup -Iuf ref/human_g1k_v37_chr20.fa bams/SAMPLE*bam | bcftools view -bvcg - > result/chr20.mpileup.bcf
 
   samtools mpileup -Iuf ref/human_g1k_v37_chr20.fa bams/SAMPLE*bam | bcftools view -bvcg - > result/chr20.mpileup.bcf
   −
   bcftools view result/chr20.mpileup.bcf  | sed 's/AF/AF1/g' > result/chr20.mpileup.vcf
+
   bcftools view result/chr20.mpileup.bcf  | sed 's/AF1/AF/g' > result/chr20.mpileup.vcf
     
Weich
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Retrieved from "http://genome.sph.umich.edu/wiki/Special:MobileDiff/4540"

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