533
edits
Changes
From Genome Analysis Wiki
Jump to navigationJump to search→Browsing Alignment Results
For bash shell
For bash shell
for file in `ls fastq/SAMPLE*.fastq | cut -f 2 -d '/' | cut -f 1 -d '.'`;
for file in `ls fastq/SAMPLE*.fastq | cut -f 2 -d '/' | cut -f 1 -d '.'`;
do echo $file;
do echo $file;
bin/bwa aln -q 15 ref/human_g1k_v37_chr20.fa fastq/$file.fastq > bwa.sai/$file.sai;
bin/bwa aln -q 15 ref/human_g1k_v37_chr20.fa fastq/$file.fastq > bwa.sai/$file.sai;
