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QPLOT (view source)

Revision as of 01:14, 16 February 2012

404 bytes removed ,  01:14, 16 February 2012
→‎Parameters
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Two kinds of labels are enabled. <code>--label</code> is the label for the plot (default is empty) which is prepended to the title of each subplot. <code>--bamLabels</code> followed by a column separated list of labels provides the labels for each input SAM/BAM file, e.g. sample ID (default is numbers 1, 2, ... until the number of input bam files). For example:
 
Two kinds of labels are enabled. <code>--label</code> is the label for the plot (default is empty) which is prepended to the title of each subplot. <code>--bamLabels</code> followed by a column separated list of labels provides the labels for each input SAM/BAM file, e.g. sample ID (default is numbers 1, 2, ... until the number of input bam files). For example:
 
  --label Run100 --bamLabels s1,s2,s3,s4,s5,s6,s7,s8
 
  --label Run100 --bamLabels s1,s2,s3,s4,s5,s6,s7,s8
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* Multiple threading (not officially supported)
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Number of concurrent threads running for the input bam files. One bam file at a time will be processed by one thread. Therefore using a number which is dividable by the number of input bam files will make it more efficient. One extra thread requires about 375Mb more memory on top of the around 4Gb of memory used to hold reference and GC content files.
      
== Output files ==
 
== Output files ==
Bingshan
480

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