Changes

If the input bam files have more than one lane and only some of them need to be checked, use something like <code>--lanes 1,3,5</code> to specify that only lanes 1, 3, and 5 need to be checked.

If the input bam files have more than one lane and only some of them need to be checked, use something like <code>--lanes 1,3,5</code> to specify that only lanes 1, 3, and 5 need to be checked.

'''NOTE''' In order for this to work, the lane info has to be encoded in the read name such that lane number is the second field with the delimiter ":".

'''NOTE''' In order for this to work, the lane info has to be encoded in the read name such that the lane number is the second field with the delimiter ":".

*Mapping filters

*Mapping filters