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From Genome Analysis Wiki
→Parameters
* Plot labels
Two kinds of labels are enabled. <code>--label</code> is the label for the plot (default is empty) which is prepended appended to the title of each subplot. <code>--bamLabels</code> followed by a column separated list of labels provides the labels for each input SAM/BAM file, e.g. sample ID (default is numbers 1, 2, ... until the number of input bam files). For example:
--label Run100 --bamLabels s1,s2,s3,s4,s5,s6,s7,s8
