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QPLOT

3 bytes removed, 03:51, 17 February 2012
Input files
qplot --rerefence reference.fa --windowsize winsize --create_gc reference.gc
''Note'': Before running qplot, it is critical to check how the chromosome numbers names are coded. Some BAM/SAM files use just numbers, others use chr + numbers. '''You need to make sure that the chromosome numbers names from the reference and dbSNP are consistent with the BAM/SAM filefiles.'''
== Parameters ==
479
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