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Revision as of 11:41, 23 February 2012
, 11:41, 23 February 2012no edit summary
* Skips reference positions with base 'N'
* Skips reference positions with base 'N'
== What is a Discordance ==
A position is considered to have a Deletion Discordance if at least 1 read has a match/mismatch AND at least 1 read has a deletion AND there are at least the "minimum depth" reads at this position.
A position is considered to have a Deletion Discordance if at least 1 read has a match/mismatch AND at least 1 read has a deletion AND there are at least the "minimum depth" reads at this position.
A position is considered to have an Insertion Discordance if at least 1 read has an insertion following this position AND at least 1 read does not AND there are at least the "minimum depth" reads at this position.
A position is considered to have an Insertion Discordance if at least 1 read has an insertion following this position AND at least 1 read does not AND there are at least the "minimum depth" reads at this position.
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= Usage =
= Usage =
