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273 bytes added ,  11:24, 25 March 2012
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     --interimInterval:    The number of rounds for interim outputs
 
     --interimInterval:    The number of rounds for interim outputs
 
</source>
 
</source>
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Notes: The pedigree files require complete trio structure. For parent-offspring pair, create a "fake" parent in the pedigree file or code them as unrelated individuals.
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The order of the names in the pedigree file is NOT necessary to be consistent with that in .vcf file.
    
To complete our example analysis, we could run:
 
To complete our example analysis, we could run:
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