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Revision as of 15:49, 27 March 2012

160 bytes removed ,  15:49, 27 March 2012
→‎Rewrite SAM/BAM file
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*[[BamUtil: writeRegion|WriteRegion]] – Write only reads in the specified region and/or have the specified read name
 
*[[BamUtil: writeRegion|WriteRegion]] – Write only reads in the specified region and/or have the specified read name
 
*[[Pileup]] – Pileup every base or just bases in specified region and write VCF
 
*[[Pileup]] – Pileup every base or just bases in specified region and write VCF
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*[[BamUtil: readIndexedBam|ReadIndexedBam]] - Read an indexed BAM file reference by reference id -1 to the max reference id and write it out as a SAM/BAM file
   
*[[BamUtil: convert#BAM File Recovery | BAM Recovery]] - Recover corrupted BAM files
 
*[[BamUtil: convert#BAM File Recovery | BAM Recovery]] - Recover corrupted BAM files
 
*[[BamUtil: asp | ASP]] - perform an asynchronous pileup producing an ASP file.  <span style="color:#D2691E">ASP is a new format that is currently in production, so this tool is not yet available for public release.</span>
 
*[[BamUtil: asp | ASP]] - perform an asynchronous pileup producing an ASP file.  <span style="color:#D2691E">ASP is a new format that is currently in production, so this tool is not yet available for public release.</span>
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==== Update the File ====
 
==== Update the File ====
Retrieved from "http://genome.sph.umich.edu/wiki/Special:MobileDiff/4738"

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