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LibStatGen: VCF

231 bytes added, 10:46, 29 March 2012
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** <code>getQual()</code> returns a float containing the phred quality score
** <code>getQualStr()</code> returns a string containing the phred quality score
* Filter Information- see [[#VcfRecordFilter|VcfRecordFilter]] for more information on extracting information
** <code>getFilter()</code> returns a reference to the Info field information, a VcfRecordInfo object reference
** <code>passedAllFilters()</code> returns true if the FILTER field indicates <code>PASS</code>, false if not.
** <code>allUnphased()</code> returns true if all the samples are unphased and none phased and false if any are not unphased
** <code>hasAllGenotypeAlleles()</code> returns true if all the samples have all the genotype alleles specified and false if any are missing or the GT field is missing.
 
=== VcfRecordFilter ===
<code>VcfRecords</code> contain the data from the <code>INFO</code> field in a <code>VcfRecordFilter</code> object.

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