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Available Options
Available Options
Shotgun Sequences: --shotgun [], --pedfile []
Shotgun Sequences: --vcf [], --pedfile []
Markov Sampler: --seed [], --burnin [], --rounds []
Markov Sampler: --seed [], --burnin [], --rounds []
Haplotyper: --states [], --errorRate [], --compact
Haplotyper: --states [], --errorRate [], --compact
Explanation of Options
Explanation of Options
--shotgun: Standard VCF file (4.0 and above).
--vcf: Standard VCF file (4.0 and above).
--pedfile: Pedigree file in MERLIN format.
--pedfile: Pedigree file in MERLIN format.
--seed: Seed for sampling, default 123456.
--seed: Seed for sampling, default 123456.
