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To complete our example analysis, we could run:
To complete our example analysis, we could run:
TrioCaller --shotgun result/chr20.mpileup.vcf --pedfile ped/triocaller.ped --rounds 10 --prefix result/chr20.triocaller
TrioCaller --vcf result/chr20.mpileup.vcf --pedfile ped/triocaller.ped --rounds 10 --prefix result/chr20.triocaller
The format of output file is same as the input file. Again, you can review the contents of the updated VCF file using the more command:
The format of output file is same as the input file. Again, you can review the contents of the updated VCF file using the more command:
