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Software (view source)

Revision as of 11:52, 30 April 2012

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**Estimate based on population allele frequencies without genotype data
 
**Estimate based on population allele frequencies without genotype data
 
*[[Pileup]] – Pileup every base or just bases in specified region and write VCF
 
*[[Pileup]] – Pileup every base or just bases in specified region and write VCF
−
  −
*[[SuperDeDuper]] - Determine duplicate alignments, either marking or removing the lower quality duplicates. In addition, it may modify paired-end reads where the ends overlap by soft clipping the end with the lower quality bases in the region of overlap.
      
==== BAM Util Tools ====
 
==== BAM Util Tools ====
Retrieved from "http://genome.sph.umich.edu/wiki/Special:MobileDiff/4834"

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