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BamUtil: stats (view source)

Revision as of 10:14, 2 May 2012

2 bytes removed ,  10:14, 2 May 2012
→‎Usage
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= Usage =
 
= Usage =
 
<pre>
 
<pre>
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./bam stats --in <inputFile> [--basic] [--qual] [--phred] [--pbaseQC <outputFileName>] [--cbaseQC <outputFileName>] [--baseSum] [--maxNumReads <maxNum>][--unmapped] [--bamIndex <bamIndexFile>] [--regionList <regFileName>] [--minMapQual <minMapQ>] [--dbsnp <dbsnpFile>] [--noeof] [--params]
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./bam stats --in <inputFile> [--basic] [--qual] [--phred] [--pBaseQC <outputFileName>] [--cBaseQC <outputFileName>] [--baseSum] [--maxNumReads <maxNum>][--unmapped] [--bamIndex <bamIndexFile>] [--regionList <regFileName>] [--minMapQual <minMapQ>] [--dbsnp <dbsnpFile>] [--noeof] [--params]
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</pre>  
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</pre>
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= Parameters  =
 
= Parameters  =
Retrieved from "http://genome.sph.umich.edu/wiki/Special:MobileDiff/4846"

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