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BamUtil

1,035 bytes added, 11:17, 4 May 2012
Releases: Update releases
=== Full Release (includes libStatGen) ===
To install an official release, unpack the downloaded file (tar xvf), cd into the bamUtil_1bamUtil_x.0x.0 x directory and type make all.
[[Media:BamUtilLibStatGen.1.0.01.tgz|BamUtilLibStatGen.1.0.01.tgz‎]] - Released 1005/1004/20112012
'''BamUtilLibStatGen.1.0.0 1 Release Notes'''* Contains: [[LibStatGen Download#Official Releases|libStatGen version 1.0.1]] * Adds: [[BamUtil: splitBam|splitBam]], [[BamUtil: clipOverlap|clipOverlap]], [[BamUtil: trimBam|trimBam]], [[BamUtil: polishBam|polishBam]], [[BamUtil: rgMergeBam|rgMergeBam]], [[BamUtil: gapInfo|gapInfo]]* Adds additional functionality to [[BamUtil: stats|stats]]* Adds leftShifting to [[BamUtil: writeRegion|writeRegion]] and [[BamUtil: convert|convert]]* Adds more diff fields to [[BamUtil: diff|diff]] '''Older Releases'''* [[Media:BamUtilLibStatGen.1.0.0.tgz|BamUtilLibStatGen.1.0.0.tgz‎]] - Released 10/10/2011**Initial release of bamUtil that includes libStatGen version 1.0.0. It started from the tool found in the deprecated StatGen repository.**Contains: [[LibStatGen Download#Official Releases|libStatGen version 1.0.0]] [[BamUtil: validate|validate]], [[BamUtil: convert|convert]], [[BamUtil: dumpHeader|dumpHeader]], [[BamUtil: splitChromosome|splitChromosome]], [[BamUtil: writeRegion|writeRegion]], [[BamUtil: dumpRefInfo|dumpRefInfo]], [[BamUtil: dumpIndex|dumpIndex]], [[BamUtil: readIndexedBam|readIndexedBam]], [[BamUtil: filter|filter]], [[BamUtil: readReference|readReference]], [[BamUtil: revert|revert]], [[BamUtil: diff|diff]], [[BamUtil: squeeze|squeeze]], [[BamUtil: findCigars|findCigars]], [[BamUtil: stats|stats]].
=== Release of just BamUtil (does not include libStatGen) ===
To install an official release, unpack the downloaded file (tar xvf), cd into the bamUtil_1bamUtil_x.0x.0 x directory and type make all.
[[Media:BamUtil.1.0.01.tgz|BamUtil.1.0.01.tgz‎]] - Released 1005/1004/20112012
'''BamUtilLibStatGenBamUtil.1.0.0 1 Release Notes'''*Initial release of just bamUtil. It started from the tool found in the deprecated StatGen repository.*ContainsAdds: [[LibStatGen Download#Official Releases|libStatGen version 1.0.0]] [[BamUtil: validatesplitBam|validatesplitBam]], [[BamUtil: convertclipOverlap|convertclipOverlap]], [[BamUtil: dumpHeadertrimBam|dumpHeadertrimBam]], [[BamUtil: splitChromosomepolishBam|splitChromosomepolishBam]], [[BamUtil: writeRegionrgMergeBam|writeRegionrgMergeBam]], [[BamUtil: dumpRefInfogapInfo|dumpRefInfogapInfo]], * Adds additional functionality to [[BamUtil: dumpIndexstats|dumpIndexstats]], * Adds leftShifting to [[BamUtil: readIndexedBamwriteRegion|readIndexedBamwriteRegion]], and [[BamUtil: filterconvert|filterconvert]], [[BamUtil: readReference|readReference]], [[BamUtil: revert|revert]], * Adds more diff fields to [[BamUtil: diff|diff]], [[BamUtil: squeeze|squeeze]], [[BamUtil: findCigars|findCigars]], [[BamUtil: stats|stats]].
'''Older Releases'''
*[[Media:BamUtil.1.0.0.tgz|BamUtil.1.0.0.tgz‎]] - Released 10/10/2011
**Initial release of just bamUtil. It started from the tool found in the deprecated StatGen repository.
**Contains: [[BamUtil: validate|validate]], [[BamUtil: convert|convert]], [[BamUtil: dumpHeader|dumpHeader]], [[BamUtil: splitChromosome|splitChromosome]], [[BamUtil: writeRegion|writeRegion]], [[BamUtil: dumpRefInfo|dumpRefInfo]], [[BamUtil: dumpIndex|dumpIndex]], [[BamUtil: readIndexedBam|readIndexedBam]], [[BamUtil: filter|filter]], [[BamUtil: readReference|readReference]], [[BamUtil: revert|revert]], [[BamUtil: diff|diff]], [[BamUtil: squeeze|squeeze]], [[BamUtil: findCigars|findCigars]], [[BamUtil: stats|stats]]
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