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Evaluating a Read Mapper on Simulated Data

9 bytes added, 10:52, 16 February 2010
Bulk statistics result
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BWA(second) Karma(second) Scenarios
2594 7182 BS_SE_DEL200_1000000_507561 4638 BS_PE_DEL200_1000000_50_?.fastq2641 -1 BS_SE_DEL30_1000000_507548 4677 BS_PE_DEL30_1000000_50_?.fastq2355 -1 BS_SE_DEL5_1000000_507225 4730 BS_PE_DEL5_1000000_50_?.fastq441 7941 BS_SE_EXACT_1000000_50975 6531 BS_PE_EXACT_1000000_50_?.fastq809 282 BS_SE_INDEL30_1000000_501726 793 BS_PE_INDEL30_1000000_50_?.fastq2217 -1 BS_SE_INDEL5_1000000_506199 4140 BS_PE_INDEL5_1000000_50_?.fastq645 7206 BS_SE_SNP1_1000000_501193 4949 BS_PE_SNP1_1000000_50_?.fastq1102 -1 BS_SE_SNP2_1000000_501646 4513 BS_PE_SNP2_1000000_50_?.fastq1142 -1 BS_SE_SNP3_1000000_502064 4089 BS_PE_SNP3_1000000_50_?.fastq6536 8874 BS_PE_DEL200_1000000_50_?2594 3707 BS_SE_DEL200_1000000_50.fastq6699 9017 BS_PE_DEL30_1000000_50_?2641 3942 BS_SE_DEL30_1000000_50.fastq6468 9033 BS_PE_DEL5_1000000_50_?2355 4263 BS_SE_DEL5_1000000_50.fastq1743 10112 BS_PE_EXACT_1000000_50_?441 4228 BS_SE_EXACT_1000000_50.fastq2305 231 BS_PE_INDEL30_1000000_50_?809 764 BS_SE_INDEL30_1000000_50.fastq5703 2989 BS_PE_INDEL5_1000000_50_?2217 3932 BS_SE_INDEL5_1000000_50.fastq1974 3718 BS_PE_SNP1_1000000_50_?645 3808 BS_SE_SNP1_1000000_50.fastq2396 3339 BS_PE_SNP2_1000000_50_?1102 3473 BS_SE_SNP2_1000000_50.fastq2817 3131 BS_PE_SNP3_1000000_50_?1142 3267 BS_SE_SNP3_1000000_50.fastq4362 16074 6193 6909 CS_PE_DEL200_1000000_50_?.fastq4385 -1 6173 6636 CS_PE_DEL30_1000000_50_?.fastq4373 9287 6096 6702 CS_PE_DEL5_1000000_50_?.fastq773 -1 858 8496 CS_PE_EXACT_1000000_50_?.fastq1735 3142 1743 948 CS_PE_INDEL30_1000000_50_?.fastq4023 8591 5517 5412 CS_PE_INDEL5_1000000_50_?.fastq1034 10528 1253 8454 CS_PE_SNP1_1000000_50_?.fastq2236 -1 2113 7420 CS_PE_SNP2_1000000_50_?.fastq3810 6617 2622 6076 CS_PE_SNP3_1000000_50_?.fastq7129 3878 1493 CS_SE_DEL200_1000000_50.fastq7115 3859 1513 CS_SE_DEL30_1000000_50.fastq7065 3775 1542 CS_SE_DEL5_1000000_50.fastq1544 621 1666 CS_SE_EXACT_1000000_50.fastq2954 1392 289 CS_SE_INDEL30_1000000_50.fastq6547 3525 1390 CS_SE_INDEL5_1000000_50.fastq1690 874 1661 CS_SE_SNP1_1000000_50.fastq2853 1965 1449 CS_SE_SNP2_1000000_50.fastq4039 3314 1237 CS_SE_SNP3_1000000_50.fastq
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