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, 11:35, 18 May 2012
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| = Overview of the <code>bam2FastQ</code> function of <code>[[bamUtil]]</code> = | | = Overview of the <code>bam2FastQ</code> function of <code>[[bamUtil]]</code> = |
| The <code>bam2FastQ</code> option on the [[bamUtil]] converts a BAM file into FastQ files. This is necessary when only BAM files are delivered but a new alignment is desired. By converting BAM to FastQ files new alignments can be done using FastQ files | | The <code>bam2FastQ</code> option on the [[bamUtil]] converts a BAM file into FastQ files. This is necessary when only BAM files are delivered but a new alignment is desired. By converting BAM to FastQ files new alignments can be done using FastQ files |
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| + | NOTE: This tool does not work on templates that have more than 2 segments. It does not properly match reads when more than 2 reads have the same read name. |
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| Any errors and a summary of how many pairs and unpaired reads were processed are written to stderr. | | Any errors and a summary of how many pairs and unpaired reads were processed are written to stderr. |
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| + | NOTE: This tool does not work on templates that have more than 2 segments. It does not properly match reads when more than 2 reads have the same read name. |
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| === Output Files === | | === Output Files === |