3,045
edits
Changes
From Genome Analysis Wiki
Jump to navigationJump to search→Other Tools
Since many of our tools still rely on GLF files and samtools stopped supporting GLF files, we created a version of samtools that still supports pileup to GLF files AND incorporates the updated BAQ logic. This version is called samtools-hybrid That code can be downloaded at: https://github.com/statgen/samtools-0.1.7a-hybrid
Since many of our tools still rely on GLF files and samtools stopped supporting GLF files, we created a version of samtools that still supports pileup to GLF files AND incorporates the updated BAQ logic. This version is called samtools-hybrid That code can be downloaded at: https://github.com/statgen/samtools-0.1.7a-hybrid
*[[baseQualityCheck]] - tool to calculate the observed base quality vs. empirical base quality (helps to evaluate mappers)
*[[baseQualityCheck]] - a mature tool to calculate the observed base quality vs. empirical base quality (helps to evaluate mappers)
== Variant Calling ==
== Variant Calling ==
