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102 bytes added ,  09:44, 30 May 2012
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| <code>--vcfReference </code>  
 
| <code>--vcfReference </code>  
 
| This option specifies that the provided --refHaps file is provided in VCF format , no --refSNPs file needed.
 
| This option specifies that the provided --refHaps file is provided in VCF format , no --refSNPs file needed.
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|-
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| <code>--rs </code>
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| In combination with --vcfReference, allows to use rs GWAS SNP identifiers
 
|-  
 
|-  
 
| <code>--snps target.snps.gz </code>
 
| <code>--snps target.snps.gz </code>
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