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BamUtil: dedup (view source)

Revision as of 10:25, 15 June 2012

43 bytes removed ,  10:25, 15 June 2012
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==Handling Recalibration==
 
==Handling Recalibration==
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Reads skipped for recalibrating (both for determining recalibrated values and for being modified):
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See [[BamUtil: recab]] for recalibration details.
−
* Duplicates
  −
* Unmapped
  −
* Mapping Quality = 0
      
== How to use it ==
 
== How to use it ==
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This option will recalibrate the input file in addition to deduping.
 
This option will recalibrate the input file in addition to deduping.
 +
 +
See [[BamUtil: recab]] for recalibration details.
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== Remove Duplicates (<code>--rmDups</code>) ==
 
== Remove Duplicates (<code>--rmDups</code>) ==
Retrieved from "http://genome.sph.umich.edu/wiki/Special:MobileDiff/4954"

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