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BamUtil

157 bytes added, 13:13, 3 July 2012
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**[[BamUtil: polishBam|'''polishBam''' – Add/Update header lines & add RG tag to each record]]
**[[BamUtil: rgMergeBam|'''rgMergeBam''' – Merge sorted BAM files adding Read Groups]]
**[[BamUtil: dedup|'''dedup''' – Mark or remove duplicates, can also perform recalibration]]
**[[BamUtil: recab|'''recab''' - Recalibrate base qualities]]
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