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LibStatGen: FASTQ

370 bytes added, 12:41, 19 February 2010
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** Return Value
*** bool: true if there were no errors in the file, false otherwise.
** Notes:
*** Invalid information is printed to cout until maxReportedErrors is hit.
*'''Read a FastQ Sequence From the File:''' readFastQSequence
** Parameters: NONE
** Return Value
*** int: FASTQ_SUCCESS if successfully read and valid, FASTQ_FAILURE if not successfully read, FASTQ_INVALID if the sequence was invalid.** Notes:*** Invalid information is printed to cout until maxReportedErrors is hit.
*'''Get the Space Type for the File:''' getSpaceType
** Parameters: NONE
** Return Value
*** BaseAsciiMap::SPACETYPE: COLOR_SPACE if the file is color space (0,1,2,3,.), BASE_SPACE if the file is base space (A,C,G,T,N), BOTH_SPACE if the file is both (0,1,2,3,.,A,C,G,T,N), or UNKNOWN if it has yet to be determined.
*'''Access last read Sequence Lines'''** Public String Variables to avoid having to copy the strings:*** mySequenceIdLine*** mySequenceIdentifier*** myRawSequence*** myPlusLine*** myQualityString
== Validation Criteria ==

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