Changes

This will generate the following files:

This will generate the following files:

* [out_prefix].reml : REML output with 6 lines, where each line represents  

* [out_prefix].reml : REML output with 6 lines, where each line represents  

##Log-likelihood with variance component  

*#Log-likelihood with variance component  

##Log-likelihood without variance component

*#Log-likelihood without variance component

## \delta = \sigma_e^2 / \sigma_g^2 (Ratio between variance parameters)

*# \delta = \sigma_e^2 / \sigma_g^2 (Ratio between variance parameters)

## \sigma_g^2 (genetic variance parameter)

*# \sigma_g^2 (genetic variance parameter)

## sigma_e^2 (residual variance parameter)

*# sigma_e^2 (residual variance parameter)

## The pseudo-heritability estimates
. (Explained variance by the kinship matrix)

*# The pseudo-heritability estimates
. (Explained variance by the kinship matrix)

* [out_prefix].ps : Each line consist of  

* [out_prefix].ps : Each line consist of  

## SNP ID

*# SNP ID

## Beta (1 is effect allele)

*# Beta (1 is effect allele)

## SE(beta)

*# SE(beta)

## p-value.

*# p-value.

=== Incorporating Covariates ===

=== Incorporating Covariates ===