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From Genome Analysis Wiki
→Additional Rules
The <code>minAltAlleleCount</code> parameter is the minimum number of alternate alleles found in the subset in order for the record to be kept.
Use the following method to remove the DiscardMinAltAlleleCount rule:
<source lang="cpp">
VcfFileReader::rmDiscardMinAltAlleleCount()
</source>
==== Read only Certain Sections of the File / Using a VCF Index (TABIX) File ====
