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This page documents how to impute 1000 Genome SNPs using [[Minimac]], which is typically the preferred approach for imputation using large reference panels such as the 1000 Genomes data. For pointers on how to carry out 1000 Genomes Imputation using [[IMPUTE2]], see [[Impute2: 1000 Genomes Imputation Cookbook]].  

This page documents how to impute 1000 Genome SNPs using [[Minimac]], which is typically the preferred approach for imputation using large reference panels such as the 1000 Genomes data. For pointers on how to carry out 1000 Genomes Imputation using [[IMPUTE2]], see [[IMPUTE2:_1000_Genomes_Imputation_Cookbook]].  

Before reading this tutorial, you might find it useful to spend a few minutes reading through the main [[Minimac]] documentation.  

Before reading this tutorial, you might find it useful to spend a few minutes reading through the main [[Minimac]] documentation.