From Genome Analysis Wiki
Jump to: navigation, search

Minimac: 1000 Genomes Imputation Cookbook

88 bytes removed, 17:08, 6 August 2012
X Chromosome Imputation
=== 1. Split the X chromosome pedigree file by sex ===
# For females: follow the same protocol as for autosomes (phase with MaCH and impute with minimac).
# For males
## Convert the pedigree file into a MaCH haplotype file (missing genotypes should be encoded as: "0" or "." or "N" ) and impute using minimac as described above.

Navigation menu