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88 bytes removed
, 18:08, 6 August 2012
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| === 1. Split the X chromosome pedigree file by sex === | | === 1. Split the X chromosome pedigree file by sex === |
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− | # For females: follow the same protocol as for autosomes (phase with MaCH and impute with minimac). | + | # For females: follow the same protocol as for autosomes |
| # For males | | # For males |
− | ## Convert the pedigree file into a MaCH haplotype file (missing genotypes should be encoded as: "0" or "." or "N" ) and impute using minimac as described above. | + | ## Convert the pedigree file into a MaCH haplotype file (missing genotypes should be encoded as: "0" or "." or "N" ) |
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